adjoint_scalar_scheme.f90

Go to the documentation of this file.

 
!
 
module adjoint_scalar_scheme
  use gather_scatter, only : gs_t
  use checkpoint, only : chkp_t
  use checkpoint_payload, only : checkpoint_payload_t
  use num_types, only: rp
  use field, only : field_t
  use field_list, only: field_list_t
  use space, only : space_t
  use dofmap, only : dofmap_t
  use krylov, only : ksp_t, krylov_solver_factory, ksp_max_iter, ksp_monitor_t
  use coefs, only : coef_t
  use bc, only : bc_t
  use bc_list, only : bc_list_t
  use precon, only : pc_t, precon_factory
  use field_dirichlet, only: field_dirichlet_t, field_dirichlet_update
  use mesh, only : mesh_t, neko_msh_max_zlbls, neko_msh_max_zlbl_len
  use facet_zone, only : facet_zone_t
  use time_scheme_controller, only : time_scheme_controller_t
  use logger, only : neko_log, log_size, neko_log_verbose
  use registry, only : neko_registry
  use json_utils, only : json_get, json_get_or_default, json_extract_item
  use json_module, only : json_file
  use user_intf, only : user_t, dummy_user_material_properties, &
       user_material_properties_intf
  use utils, only : neko_error, neko_warning
  use comm, only: neko_comm
  use scalar_source_term, only : scalar_source_term_t
  use field_series, only : field_series_t
  use math, only : cfill, add2s2
  use field_math, only : field_cmult, field_col3, field_cfill, field_add2, &
       field_col2
  use device_math, only : device_cfill, device_add2s2
  use neko_config, only : neko_bcknd_device
  use field_series, only : field_series_t
  use time_step_controller, only : time_step_controller_t
  use json_utils_ext, only: json_key_fallback
  use scalar_scheme, only: scalar_scheme_precon_factory, &
       scalar_scheme_solver_factory
  use scratch_registry, only : neko_scratch_registry
  use time_state, only : time_state_t
  use device, only : device_memcpy, device_to_host
  use field_math, only : field_col3, field_cmult2, field_add2, field_cfill
  use mpi_f08, only: mpi_integer, mpi_sum
  implicit none
 
  type, abstract :: adjoint_scalar_scheme_t
     character(len=:), allocatable :: name
     character(len=:), allocatable :: primal_name
     type(field_t), pointer :: u
     type(field_t), pointer :: v
     type(field_t), pointer :: w
     type(field_t), pointer :: s
     type(field_t), pointer :: s_adj
     type(field_series_t) :: s_adj_lag
     type(space_t), pointer :: xh
     type(dofmap_t), pointer :: dm_xh
     type(gs_t), pointer :: gs_xh
     type(coef_t), pointer :: c_xh
     type(field_t), pointer :: f_xh => null()
     type(scalar_source_term_t) :: source_term
     class(ksp_t), allocatable :: ksp
     integer :: ksp_maxiter
     integer :: projection_dim
     
     integer :: projection_activ_step
     class(pc_t), allocatable :: pc
     type(bc_list_t) :: bcs
     type(json_file), pointer :: params
     type(mesh_t), pointer :: msh => null()
     type(chkp_t), pointer :: chkp => null()
     character(len=:), allocatable :: nut_field_name
     type(field_t), pointer :: rho => null()
     type(field_t) :: lambda
     type(field_t) :: cp
     real(kind=rp) :: pr_turb
     type(field_list_t) :: material_properties
     logical :: variable_material_properties = .false.
     ! Lag arrays for the RHS.
     type(field_t) :: abx1, abx2
     procedure(user_material_properties_intf), nopass, pointer :: &
          user_material_properties => null()
     logical :: freeze = .false.
   contains
     procedure, pass(this) :: scheme_init => adjoint_scalar_scheme_init
     procedure, pass(this) :: scheme_free => adjoint_scalar_scheme_free
     procedure, pass(this) :: validate => adjoint_scalar_scheme_validate
     procedure, pass(this) :: set_material_properties => &
          adjoint_scalar_scheme_set_material_properties
     procedure, pass(this) :: update_material_properties => &
          adjoint_scalar_scheme_update_material_properties
     procedure, pass(this) :: register_checkpoint => &
          adjoint_scalar_scheme_register_checkpoint
     procedure(adjoint_scalar_scheme_init_intrf), pass(this), deferred :: init
     procedure(adjoint_scalar_scheme_free_intrf), pass(this), deferred :: free
     procedure(adjoint_scalar_scheme_step_intrf), pass(this), deferred :: step
     procedure(adjoint_scalar_scheme_restart_intrf), pass(this), deferred :: &
          restart
  end type adjoint_scalar_scheme_t
 
  abstract interface
     subroutine adjoint_scalar_scheme_init_intrf(this, msh, coef, gs, &
          params_adjoint, params_primal, numerics_params, user, chkp, ulag, &
          vlag, wlag, time_scheme, rho)
       import adjoint_scalar_scheme_t
       import json_file
       import coef_t
       import gs_t
       import mesh_t
       import user_t
       import field_series_t, field_t
       import time_scheme_controller_t
       import rp
       import chkp_t
       class(adjoint_scalar_scheme_t), target, intent(inout) :: this
       type(mesh_t), target, intent(in) :: msh
       type(coef_t), target, intent(in) :: coef
       type(gs_t), target, intent(inout) :: gs
       type(json_file), target, intent(inout) :: params_adjoint
       type(json_file), target, intent(inout) :: params_primal
       type(json_file), target, intent(inout) :: numerics_params
       type(user_t), target, intent(in) :: user
       type(chkp_t), target, intent(inout) :: chkp
       type(field_series_t), target, intent(in) :: ulag, vlag, wlag
       type(time_scheme_controller_t), target, intent(in) :: time_scheme
       type(field_t), target, intent(in) :: rho
     end subroutine adjoint_scalar_scheme_init_intrf
  end interface
 
  abstract interface
     subroutine adjoint_scalar_scheme_restart_intrf(this, chkp)
       import adjoint_scalar_scheme_t
       import chkp_t
       import rp
       class(adjoint_scalar_scheme_t), target, intent(inout) :: this
       type(chkp_t), intent(inout) :: chkp
     end subroutine adjoint_scalar_scheme_restart_intrf
  end interface
 
  abstract interface
     subroutine adjoint_scalar_scheme_free_intrf(this)
       import adjoint_scalar_scheme_t
       class(adjoint_scalar_scheme_t), intent(inout) :: this
     end subroutine adjoint_scalar_scheme_free_intrf
  end interface
 
  abstract interface
     subroutine adjoint_scalar_scheme_step_intrf(this, time, ext_bdf, &
          dt_controller, ksp_results)
       import adjoint_scalar_scheme_t
       import time_state_t
       import time_scheme_controller_t
       import time_step_controller_t
       import ksp_monitor_t
       class(adjoint_scalar_scheme_t), intent(inout) :: this
       type(time_state_t), intent(in) :: time
       type(time_scheme_controller_t), intent(in) :: ext_bdf
       type(time_step_controller_t), intent(in) :: dt_controller
       type(ksp_monitor_t), intent(inout) :: ksp_results
     end subroutine adjoint_scalar_scheme_step_intrf
  end interface
 
contains
 
  subroutine adjoint_scalar_scheme_init(this, msh, c_Xh, gs_Xh, &
       params_adjoint, params_primal, scheme, user, rho)
    class(adjoint_scalar_scheme_t), target, intent(inout) :: this
    type(mesh_t), target, intent(in) :: msh
    type(coef_t), target, intent(in) :: c_Xh
    type(gs_t), target, intent(inout) :: gs_Xh
    type(json_file), target, intent(inout) :: params_primal, params_adjoint
    character(len=*), intent(in) :: scheme
    type(user_t), target, intent(in) :: user
    type(field_t), target, intent(in) :: rho
    type(json_file), pointer :: params_selected
    ! IO buffer for log output
    character(len=LOG_SIZE) :: log_buf
    ! Variables for retrieving json parameters
    logical :: logical_val
    real(kind=rp) :: solver_abstol
    integer :: integer_val
    character(len=:), allocatable :: solver_type, solver_precon
    type(json_file) :: precon_params
 
    this%u => neko_registry%get_field('u')
    this%v => neko_registry%get_field('v')
    this%w => neko_registry%get_field('w')
    this%rho => rho
 
    ! get the primal adjoint's name
    call json_get_or_default(params_adjoint, 'primal_name', this%primal_name, &
         's')
    ! Assign a name
    call json_get_or_default(params_adjoint, 'name', this%name, &
         this%primal_name // '_adj')
 
    call neko_log%section('Adjoint scalar')
    params_selected => json_key_fallback(params_adjoint, params_primal, &
         'solver.type')
    call json_get(params_selected, 'solver.type', solver_type)
 
    params_selected => json_key_fallback(params_adjoint, params_primal, &
         'solver.preconditioner.type')
    call json_get(params_selected, 'solver.preconditioner.type', solver_precon)
 
    params_selected => json_key_fallback(params_adjoint, params_primal, &
         'solver.preconditioner')
    call json_get(params_selected, 'solver.preconditioner', &
         precon_params)
 
    params_selected => json_key_fallback(params_adjoint, params_primal, &
         'solver.absolute_tolerance')
    call json_get(params_selected, 'solver.absolute_tolerance', &
         solver_abstol)
 
    params_selected => json_key_fallback(params_adjoint, params_primal, &
         'solver.projection_space_size')
    call json_get_or_default(params_selected, &
         'solver.projection_space_size', &
         this%projection_dim, 0)
 
    params_selected => json_key_fallback(params_adjoint, params_primal, &
         'solver.projection_hold_steps')
    call json_get_or_default(params_selected, &
         'solver.projection_hold_steps', &
         this%projection_activ_step, 5)
 
 
    write(log_buf, '(A, A)') 'Type       : ', trim(scheme)
    call neko_log%message(log_buf)
    write(log_buf, '(A, A)') 'Name       : ', trim(this%name)
    call neko_log%message(log_buf)
    call neko_log%message('Ksp adjoint scalar : ('// trim(solver_type) // &
         ', ' // trim(solver_precon) // ')')
    write(log_buf, '(A,ES13.6)') ' `-abs tol :', solver_abstol
    call neko_log%message(log_buf)
 
    this%Xh => this%u%Xh
    this%dm_Xh => this%u%dof
    this%params => params_adjoint
    this%msh => msh
 
    if (.not. neko_registry%field_exists(this%name)) then
       call neko_registry%add_field(this%dm_Xh, this%name)
    end if
 
    this%s_adj => neko_registry%get_field(this%name)
 
    call this%s_adj_lag%init(this%s_adj, 2)
 
    this%s => neko_registry%get_field(this%primal_name)
 
    this%gs_Xh => gs_xh
    this%c_Xh => c_xh
 
    !
    ! Material properties
    !
    call this%set_material_properties(params_primal, user)
 
 
    !
    ! Turbulence modelling and variable material properties
    !
    params_selected => json_key_fallback(params_adjoint, params_primal, &
         'variable_material_properties')
    if (params_selected%valid_path('variable_material_properties')) then
       call neko_error('variable material properties no supported for adjoint')
    end if
 
    write(log_buf, '(A,L1)') 'LES        : ', this%variable_material_properties
    call neko_log%message(log_buf)
 
    !
    ! Setup right-hand side field.
    !
    allocate(this%f_Xh)
    call this%f_Xh%init(this%dm_Xh, fld_name = "adjoint_scalar_rhs")
 
    ! Initialize the source term
    call this%source_term%init(this%f_Xh, this%c_Xh, user, this%name)
    ! We should ONLY read the adjoint
    call this%source_term%add(params_primal, 'source_terms')
 
    ! todo parameter file ksp tol should be added
    params_selected => json_key_fallback(params_adjoint, params_primal, &
         'solver.max_iterations')
    call json_get_or_default(params_selected, &
         'solver.max_iterations', &
         integer_val, ksp_max_iter)
    params_selected => json_key_fallback(params_adjoint, params_primal, &
         'solver.monitor')
    call json_get_or_default(params_selected, &
         'solver.monitor', &
         logical_val, .false.)
    call adjoint_scalar_scheme_solver_factory(this%ksp, this%dm_Xh%size(), &
         solver_type, integer_val, solver_abstol, logical_val)
    call scalar_scheme_precon_factory(this%pc, this%ksp, &
         this%c_Xh, this%bcs, &
         solver_precon, precon_params)
 
    call neko_log%end_section()
 
  end subroutine adjoint_scalar_scheme_init
 
  subroutine adjoint_scalar_scheme_register_checkpoint(this, chkp)
    class(adjoint_scalar_scheme_t), target, intent(inout) :: this
    type(chkp_t), intent(inout) :: chkp
    type(checkpoint_payload_t), pointer :: payload
 
    payload => chkp%add_payload("adjoint_scalars/" // trim(this%name))
    call payload%add_field(this%s_adj)
    call payload%add_series(this%s_adj_lag)
 
  end subroutine adjoint_scalar_scheme_register_checkpoint
 
  subroutine adjoint_scalar_scheme_free(this)
    class(adjoint_scalar_scheme_t), intent(inout) :: this
    class(bc_t), pointer :: bc
    integer :: i
 
    bc => null()
 
    nullify(this%Xh)
    nullify(this%dm_Xh)
    nullify(this%gs_Xh)
    nullify(this%c_Xh)
    nullify(this%params)
 
    if (allocated(this%ksp)) then
       call this%ksp%free()
       deallocate(this%ksp)
    end if
 
    if (allocated(this%pc)) then
       call this%pc%free()
       deallocate(this%pc)
    end if
 
    call this%source_term%free()
 
    if (associated(this%f_Xh)) then
       call this%f_Xh%free()
       deallocate(this%f_Xh)
       nullify(this%f_Xh)
    end if
 
    do i = 1, this%bcs%size()
       bc => this%bcs%get(i)
       if (associated(bc)) then
          call bc%free()
          deallocate(bc)
       end if
    end do
 
    call this%bcs%free()
 
    call this%cp%free()
    call this%lambda%free()
    call this%s_adj_lag%free()
 
    nullify(bc)
 
  end subroutine adjoint_scalar_scheme_free
 
  subroutine adjoint_scalar_scheme_validate(this)
    class(adjoint_scalar_scheme_t), target, intent(inout) :: this
 
    if ( (.not. allocated(this%u%x)) .or. &
         (.not. allocated(this%v%x)) .or. &
         (.not. allocated(this%w%x)) .or. &
         (.not. allocated(this%s%x)) .or. &
         (.not. allocated(this%s_adj%x))) then
       call neko_error('Fields are not allocated')
    end if
 
    if (.not. allocated(this%ksp)) then
       call neko_error('No Krylov solver for velocity defined')
    end if
 
    if (.not. associated(this%Xh)) then
       call neko_error('No function space defined')
    end if
 
    if (.not. associated(this%dm_Xh)) then
       call neko_error('No dofmap defined')
    end if
 
    if (.not. associated(this%c_Xh)) then
       call neko_error('No coefficients defined')
    end if
 
    if (.not. associated(this%f_Xh)) then
       call neko_error('No rhs allocated')
    end if
 
    if (.not. associated(this%params)) then
       call neko_error('No parameters defined')
    end if
 
    if (.not. associated(this%rho)) then
       call neko_error('No density field defined')
    end if
 
  end subroutine adjoint_scalar_scheme_validate
 
  subroutine adjoint_scalar_scheme_solver_factory(ksp, n, solver, max_iter, &
       abstol, monitor)
    class(ksp_t), allocatable, target, intent(inout) :: ksp
    integer, intent(in), value :: n
    integer, intent(in) :: max_iter
    character(len=*), intent(in) :: solver
    real(kind=rp) :: abstol
    logical, intent(in) :: monitor
 
    call krylov_solver_factory(ksp, n, solver, max_iter, &
         abstol, monitor = monitor)
 
  end subroutine adjoint_scalar_scheme_solver_factory
 
  subroutine adjoint_scalar_scheme_precon_factory(pc, ksp, coef, &
       bclst, pctype, json)
    class(pc_t), allocatable, target, intent(inout) :: pc
    class(ksp_t), target, intent(inout) :: ksp
    type(coef_t), target, intent(in) :: coef
    type(bc_list_t), target, intent(inout) :: bclst
    character(len=*) :: pctype
    type(json_file), intent(inout) :: json
 
    call precon_factory(pc, pctype, coef, bclst, json)
    call ksp%set_pc(pc)
 
  end subroutine adjoint_scalar_scheme_precon_factory
 
  subroutine adjoint_scalar_scheme_update_material_properties(this, time)
    class(adjoint_scalar_scheme_t), intent(inout) :: this
    type(time_state_t), intent(in) :: time
    type(field_t), pointer :: nut
    integer :: index
    ! Factor to transform nu_t to lambda_t
    type(field_t), pointer :: lambda_factor
 
    call this%user_material_properties(this%name, this%material_properties, &
         time)
 
    ! factor = rho * cp / pr_turb
    if (this%variable_material_properties .and. &
         len(trim(this%nut_field_name)) > 0) then
       nut => neko_registry%get_field(this%nut_field_name)
 
       ! lambda = lambda + rho * cp * nut / pr_turb
       call neko_scratch_registry%request_field(lambda_factor, index, .false.)
 
       call field_col3(lambda_factor, this%cp, this%rho)
       call field_col2(lambda_factor, nut)
       call field_cmult(lambda_factor, 1.0_rp / this%pr_turb)
       call field_add2(this%lambda, lambda_factor)
       call neko_scratch_registry%relinquish_field(index)
    end if
 
    ! Since cp is a fields and we use the %x(1,1,1,1) of the
    ! host array data to pass constant  material properties
    ! to some routines, we need to make sure that the host
    ! values are also filled
    if (neko_bcknd_device .eq. 1) then
       call device_memcpy(this%cp%x, this%cp%x_d, this%cp%size(), &
            device_to_host, sync=.false.)
    end if
 
  end subroutine adjoint_scalar_scheme_update_material_properties
 
  subroutine adjoint_scalar_scheme_set_material_properties(this, &
       params_primal, user)
    class(adjoint_scalar_scheme_t), intent(inout) :: this
    type(json_file), intent(inout) :: params_primal
    type(user_t), target, intent(in) :: user
    character(len=LOG_SIZE) :: log_buf
    ! A local pointer that is needed to make Intel happy
    procedure(user_material_properties_intf), pointer :: dummy_mp_ptr
    real(kind=rp) :: const_cp, const_lambda
    ! Dummy time state set to 0
    type(time_state_t) :: time
 
    dummy_mp_ptr => dummy_user_material_properties
 
    ! Fill lambda field with the physical value
    call this%lambda%init(this%dm_Xh, "lambda")
    call this%cp%init(this%dm_Xh, "cp")
 
    call this%material_properties%init(2)
    call this%material_properties%assign_to_field(1, this%cp)
    call this%material_properties%assign_to_field(2, this%lambda)
 
    if (.not. associated(user%material_properties, dummy_mp_ptr)) then
 
       write(log_buf, '(A)') "Material properties must be set in the user " // &
            "file!"
       call neko_log%message(log_buf)
       this%user_material_properties => user%material_properties
       call user%material_properties(this%name, this%material_properties, time)
    else
       this%user_material_properties => dummy_user_material_properties
       if (params_primal%valid_path('Pe') .and. &
            (params_primal%valid_path('lambda') .or. &
            params_primal%valid_path('cp'))) then
          call neko_error("To set the material properties for the scalar, " // &
               "either provide Pe OR lambda and cp in the case file.")
          ! Non-dimensional case
       else if (params_primal%valid_path('Pe')) then
          write(log_buf, '(A)') 'Non-dimensional scalar material properties' //&
               ' input.'
          call neko_log%message(log_buf, lvl = neko_log_verbose)
          write(log_buf, '(A)') 'Specific heat capacity will be set to 1,'
          call neko_log%message(log_buf, lvl = neko_log_verbose)
          write(log_buf, '(A)') 'conductivity to 1/Pe. Assumes density is 1.'
          call neko_log%message(log_buf, lvl = neko_log_verbose)
 
          ! Read Pe into lambda for further manipulation.
          call json_get(params_primal, 'Pe', const_lambda)
          write(log_buf, '(A,ES13.6)') 'Pe         :', const_lambda
          call neko_log%message(log_buf)
 
          ! Set cp and rho to 1 since the setup is non-dimensional.
          const_cp = 1.0_rp
          ! Invert the Pe to get conductivity
          const_lambda = 1.0_rp/const_lambda
          ! Dimensional case
       else
          call json_get(params_primal, 'lambda', const_lambda)
          call json_get(params_primal, 'cp', const_cp)
       end if
    end if
    ! We need to fill the fields based on the parsed const values
    ! if the user routine is not used.
    if (associated(user%material_properties, dummy_mp_ptr)) then
       ! Fill mu and rho field with the physical value
       call field_cfill(this%lambda, const_lambda)
       call field_cfill(this%cp, const_cp)
 
       write(log_buf, '(A,ES13.6)') 'lambda     :', const_lambda
       call neko_log%message(log_buf)
       write(log_buf, '(A,ES13.6)') 'cp         :', const_cp
       call neko_log%message(log_buf)
    end if
 
    ! Since cp is a field and we use the %x(1,1,1,1) of the
    ! host array data to pass constant material properties
    ! to some routines, we need to make sure that the host
    ! values are also filled
    if (neko_bcknd_device .eq. 1) then
       call device_memcpy(this%cp%x, this%cp%x_d, this%cp%size(), &
            device_to_host, sync=.false.)
    end if
  end subroutine adjoint_scalar_scheme_set_material_properties
 
end module adjoint_scalar_scheme