checkpoint.f90

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!
module simulation_checkpoint
  use num_types, only: rp, sp, dp
  use case, only: case_t
  use json_file_module, only: json_file
  use json_utils, only: json_get_or_default
  use scalar_scheme, only: scalar_scheme_t
  use time_state, only: time_state_t
  use chkp_output, only: chkp_output_t
  use field, only: field_t
  use mpi_f08, only: mpi_wtime
  use utils, only: neko_error
  use field_math, only: field_copy, field_rzero
  use profiler, only: profiler_start_region, profiler_end_region
  implicit none
  private
 
  type, public :: simulation_checkpoint_t
     private
 
     ! ----------------------------------------------------------------------- !
     ! User parameters
 
     logical :: enabled = .false.
     character(len=256) :: algorithm = "linear"
     character(len=256) :: filename = "checkpoint"
     character(len=8) :: fmt = "chkp"
     integer :: n_saves_memory = 10
     logical :: keep_checkpoints = .true.
 
     ! Internal parameters
     integer :: n_saves_disc = 0
     integer :: n_timesteps = 0
     integer :: first_valid_timestep = 2
     integer :: loaded_checkpoint = -1
 
     ! Structures to hold the checkpoint data
     type(chkp_output_t) :: chkp_output
     type(field_t), dimension(:), allocatable :: p_list
     type(field_t), dimension(:), allocatable :: u_list
     type(field_t), dimension(:), allocatable :: v_list
     type(field_t), dimension(:), allocatable :: w_list
 
     integer :: n_scalars = 0
     type(field_t), dimension(:), allocatable :: s_list
 
   contains
     generic, public :: init => init_from_json, init_from_components
     procedure, public, pass(this) :: init_from_json => &
          checkpoint_init_from_json
     procedure, public, pass(this) :: init_from_components => &
          checkpoint_init_from_components
     procedure, public, pass(this) :: free => checkpoint_free
     procedure, public, pass(this) :: reset => checkpoint_reset
     procedure, public, pass(this) :: save => checkpoint_save
     procedure, public, pass(this) :: restore => checkpoint_restore
 
  end type simulation_checkpoint_t
 
  ! ========================================================================== !
  ! Module procedures for our algorithm implementations.
 
 
  interface
 
     module subroutine checkpoint_save_linear(this, neko_case)
       class(simulation_checkpoint_t), intent(inout) :: this
       class(case_t), intent(inout) :: neko_case
     end subroutine checkpoint_save_linear
 
     module subroutine checkpoint_restore_linear(this, neko_case, tstep)
       class(simulation_checkpoint_t), intent(inout) :: this
       class(case_t), target, intent(inout) :: neko_case
       integer, intent(in) :: tstep
     end subroutine checkpoint_restore_linear
  end interface
 
contains
 
  ! ========================================================================== !
  ! Initialization and deallocation
 
  subroutine checkpoint_init_from_json(this, neko_case, params)
    class(simulation_checkpoint_t), intent(inout) :: this
    class(case_t), target, intent(inout) :: neko_case
    type(json_file), target, intent(inout) :: params
    integer :: n_saves_memory
    character(len=:), allocatable :: filename, algorithm, fmt
    logical :: enabled, keep_checkpoints
 
    call json_get_or_default(params, "enabled", enabled, .false.)
    if (.not. enabled) return
 
    call json_get_or_default(params, "algorithm", algorithm, "linear")
    call json_get_or_default(params, "n_memory", n_saves_memory, 10)
    call json_get_or_default(params, "filename", filename, "checkpoint")
    call json_get_or_default(params, "format", fmt, "chkp")
    call json_get_or_default(params, "keep_checkpoints", keep_checkpoints, &
         .true.)
 
    call this%init_from_components(neko_case, algorithm, n_saves_memory, &
         filename, fmt, keep_checkpoints)
  end subroutine checkpoint_init_from_json
 
  subroutine checkpoint_init_from_components(this, neko_case, algorithm, &
       n_saves_memory, filename, fmt, keep_checkpoints)
    class(simulation_checkpoint_t), intent(inout), target :: this
    class(case_t), target, intent(inout) :: neko_case
    character(len=*), optional, intent(in) :: algorithm
    integer, optional, intent(in) :: n_saves_memory
    character(len=*), optional, intent(in) :: filename
    character(len=*), optional, intent(in) :: fmt
    logical, optional, intent(in) :: keep_checkpoints
 
    class(scalar_scheme_t), pointer :: scalar_i
    integer :: i, j
    character(len=80) :: str
 
    call this%free()
 
    ! Set internal parameters
    this%enabled = .true.
    if (present(algorithm)) this%algorithm = algorithm
    if (present(filename)) this%filename = filename
    if (present(n_saves_memory)) this%n_saves_memory = n_saves_memory
    if (present(fmt)) this%fmt = fmt
    if (present(keep_checkpoints)) this%keep_checkpoints = keep_checkpoints
 
    if (allocated(neko_case%scalars)) then
       this%n_scalars = size(neko_case%scalars%scalar_fields)
    end if
 
 
    ! Initialize the Neko checkpoint output
    call this%chkp_output%init(neko_case%chkp, this%filename, fmt = this%fmt, &
         overwrite = .true.)
 
    ! Allocate the RAM Checkpoints
    allocate(this%p_list(this%n_saves_memory))
    allocate(this%u_list(this%n_saves_memory))
    allocate(this%v_list(this%n_saves_memory))
    allocate(this%w_list(this%n_saves_memory))
    if (this%n_scalars .gt. 0) then
       this%n_scalars = size(neko_case%scalars%scalar_fields)
       allocate(this%s_list(this%n_saves_memory * this%n_scalars))
    end if
 
    do i = 1, this%n_saves_memory
       write(str, '(A,I0)') "p_chkp_", i
       call this%p_list(i)%init(neko_case%fluid%p%dof, str)
       write(str, '(A,I0)') "u_chkp_", i
       call this%u_list(i)%init(neko_case%fluid%u%dof, str)
       write(str, '(A,I0)') "v_chkp_", i
       call this%v_list(i)%init(neko_case%fluid%v%dof, str)
       write(str, '(A,I0)') "w_chkp_", i
       call this%w_list(i)%init(neko_case%fluid%w%dof, str)
       if (this%n_scalars .gt. 0) then
          do j = 1, this%n_scalars
             write(str, '(A,I0,A,I0)') "s_chkp_", i, "_", j
             scalar_i => neko_case%scalars%scalar_fields(j)
             call this%s_list((i - 1) * this%n_scalars + j)%init(scalar_i%s%dof, str)
          end do
       end if
    end do
 
  end subroutine checkpoint_init_from_components
 
  subroutine checkpoint_free(this)
    class(simulation_checkpoint_t), intent(inout) :: this
    integer :: i
    character(len=1024) :: file_name
    logical :: exists
    integer :: stat, unit
 
    ! Free the RAM Checkpoints
    do i = 1, this%n_saves_memory
       if (allocated(this%p_list)) call this%p_list(i)%free()
       if (allocated(this%u_list)) call this%u_list(i)%free()
       if (allocated(this%v_list)) call this%v_list(i)%free()
       if (allocated(this%w_list)) call this%w_list(i)%free()
    end do
 
    if (allocated(this%s_list)) then
       do i = 1, size(this%s_list)
          call this%s_list(i)%free()
       end do
       this%n_scalars = 0
    end if
 
    if (allocated(this%p_list)) deallocate(this%p_list)
    if (allocated(this%u_list)) deallocate(this%u_list)
    if (allocated(this%v_list)) deallocate(this%v_list)
    if (allocated(this%w_list)) deallocate(this%w_list)
    if (allocated(this%s_list)) deallocate(this%s_list)
 
    ! Delete the checkpoint file list
    if (.not. this%keep_checkpoints) then
       do i = this%n_timesteps, 1, -1
          call this%chkp_output%set_counter(i)
          file_name = this%chkp_output%file_%get_fname()
          inquire(file = trim(file_name), exist = exists)
          if (exists) then
             open(newunit = unit, file = trim(file_name), iostat = stat, &
                  status='old')
             if (stat .eq. 0) close(unit, status = 'delete')
          end if
       end do
    end if
 
    ! Reset to default values
    this%enabled = .false.
    this%filename = "checkpoint"
    this%fmt = "chkp"
    this%algorithm = "linear"
    this%n_saves_memory = 10
    this%keep_checkpoints = .true.
 
    this%n_saves_disc = 0
    this%n_timesteps = 0
    this%first_valid_timestep = 2
    this%loaded_checkpoint = -1
 
  end subroutine checkpoint_free
 
  ! ========================================================================== !
  ! Saving and Restoring
 
  subroutine checkpoint_save(this, neko_case)
    class(simulation_checkpoint_t), intent(inout) :: this
    class(case_t), intent(inout) :: neko_case
 
    if (.not. this%enabled) return
 
    call profiler_start_region("Checkpoint save")
 
    ! Update the number of recorded timesteps
    this%n_timesteps = this%n_timesteps + 1
 
    select case (this%algorithm)
    case ("linear")
       call checkpoint_save_linear(this, neko_case)
    case default
       call neko_error("Unknown checkpoint algorithm: " // this%algorithm)
    end select
 
    call profiler_end_region("Checkpoint save")
  end subroutine checkpoint_save
 
  subroutine checkpoint_restore(this, neko_case, tstep)
    class(simulation_checkpoint_t), intent(inout) :: this
    class(case_t), target, intent(inout) :: neko_case
    integer, intent(in) :: tstep
    character(len=256) :: msg
 
    if (.not. this%enabled) return
 
    call profiler_start_region("Checkpoint restore")
 
    if (tstep .lt. 1 .or. tstep .gt. this%n_timesteps) then
       write(msg, '(A,I0,A,I0,A)') "Requested timestep ", tstep, &
            " is out of range [1, ", this%n_timesteps, "]"
       call neko_error(trim(msg))
    end if
 
    select case (this%algorithm)
    case ("linear")
       call checkpoint_restore_linear(this, neko_case, tstep)
    case default
       call neko_error("Unknown checkpoint algorithm: " // this%algorithm)
    end select
 
    call profiler_end_region("Checkpoint restore")
  end subroutine checkpoint_restore
 
  ! ========================================================================== !
  ! Meta handling
 
  subroutine checkpoint_reset(this)
    class(simulation_checkpoint_t), intent(inout) :: this
    integer :: i
 
    if (.not. this%enabled) return
 
    ! Reset our checkpoints
    this%loaded_checkpoint = -1
    this%n_saves_disc = 0
    this%n_timesteps = 0
 
    do i = 1, this%n_saves_memory
       call field_rzero(this%p_list(i))
       call field_rzero(this%u_list(i))
       call field_rzero(this%v_list(i))
       call field_rzero(this%w_list(i))
    end do
 
    if (allocated(this%s_list)) then
       do i = 1, size(this%s_list)
          call field_rzero(this%s_list(i))
       end do
    end if
  end subroutine checkpoint_reset
 
end module simulation_checkpoint